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2009
Fold Space Unlimited
Current Opinion in Structural Biology,
19, pp. 312-320
(2009)
COPS—A Novel Workbench For Explorations In Fold Space
Nucleic Acids Research,
Web Server Issue, pp. W539-W544
(2009)
2008
High Performance Signal Peptide Prediction Based on Sequence Alignment Techniques
Bioinformatics,
24, pp. 2172-2176
(2008)
On Novelty and Redundancy in Fold Space
submitted
(2008)
Instant Classification of New Protein Structures
submitted
(2008)
Visualization of unfavorable interactions in protein folds
Bioinformatics,
24, pp. 1206-1207
(2008)
On Distance and Similarity in Fold Space
Bioinformatics,
24, pp. 872-873
(2008)
A Discrete View on Fold Space
Bioinformatics,
24, pp. 870-871
(2008)
A Note on Difficult Structure Alignment Problems
Bioinformatics,
24, pp. 426-427
(2008)
2007
QSCOP-BLAST--fast retrieval of quantified structural information for protein sequences of unknown structure
Nucleic Acids Research,
35, pp. W411-W415
(2007)
NQ-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures
Nucleic Acids Research,
35, pp. W403-W406
(2007)
ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
Nucleic Acids Research,
35, pp. W407-W410
(2007)
QSCOP -- SCOP quantified by structural relationships
Bioinformatics,
23,
pp. 513-514,
(2007)
2006
Protein Structure Prediction and Molecular Forces in Protein Folding-misfolding: Some Current Concepts of Protein Chemistry; Joseph P. Zbilut & Thomas Scheibel (Eds.)
Nova Biomedical,
ISBN-13: 978-1600214172,
(2006)
NQ-Flipper: validation and correction of asparagine/glutamine amide rotamers in protein crystal structures.
Bioinformatics,
22,
pp. 1397-1398,
(2006)
Self-Consistent Assignment of Asparagine and Glutamine Amide Rotamers in Protein Crystal Structures.
Structure,
14,
pp. 967-972,
(2006)
2005
Protein sequence randomization: efficient estimation of protein stability using knowledge-based potentials.
J Mol Biol,
345,
pp. 1199-1212,
(2005)
2004
WILMA - automated annotation of protein sequences
Bioinformatics.,
20,
pp. -,
(2004)
Directed in silico mutagenesis
Evolutionary Methods in Biotechnology (Brakmann,S., Schwienhorst,A. (eds)).,
0:,
pp. 154-175,
(2004)
2002
Gene expression profiling of prolonged cold ischemia and reperfusion in murine heart transplants.
Transplantation.,
74,
pp. 1441-1449,
(2002)
Tailor-made recombinant proteins: from computational analysis to practical application
,
(2002)
2001
Assessing protein models: An evaluation of the performance of different score types.
Rational Approaches to Drug Design.,
0:,
pp. 99-104,
(2001)
Assessment of the CASP4 Fold Recognition Category.
Proteins.,
45,
pp. 55-67,
(2001)
2000
The role of protein structure in genomics.
FEBS Lett.,
476,
pp. 98-102,
(2000)
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
J.Mol.Biol.,
297,
pp. 1003-1013,
(2000)
Characterization of novel proteins based on known protein structures.
J.Mol.Biol.,
296,
pp. 1139-1152,
(2000)
ProSup: a refined tool for protein structure alignment
Protein Eng.,
13,
pp. 745-752,
(2000)
Structure-derived substitution matrices for alignment of distantly related sequences.
Protein Eng.,
13,
pp. 545-550,
(2000)
1999
Sustained performance of knowledge-based potentials in fold recognition.
Proteins.,
37,
pp. 112-120,
(1999)
Isoforms of the major allergen of birch pollen induce different immune responses after genetic immunization.
Int.Arch.Allergy Immunol.,
120,
pp. 17-29,
(1999)
Fold recognition study of alpha3-galactosyltransferase and molecular modeling of the nucleotide sugar-binding domain.
Glycobiology.,
9,
pp. 713-722,
(1999)
Automated large scale evaluation of protein structure predictions.
Proteins.,
37,
pp. 7-14,
(1999)
Who solved the protein folding problem?
Structure Fold.Des.,
7,
pp. R81-R83,
(1999)
An attempt to analyse progress in fold recognition from CASP1 to CASP3.
Proteins.,
37,
pp. 226-230,
(1999)
1998
Systematic fold recognition analysis of the sequences encoded by the genome of Mycoplasma pneumoniae.
Protein Eng.,
11,
pp. 1129-1135,
(1998)
Knowledge-based potentials--back to the roots.
Biochemistry (Mosc).,
63,
pp. 247-252,
(1998)
1997
Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force.
Fold.Des.,
2,
pp. 261-269,
(1997)
Protein folds from pair interactions: a blind test in fold recognition.
Proteins Suppl.,
Suppl 1:,
pp. 129-133,
(1997)
Theory and simulation. Old problems, new paradigms.
Curr.Opin.Struct.Biol.,
7,
pp. 179-180,
(1997)
Empirical potentials and functions for protein folding and binding.
Curr.Opin.Struct.Biol.,
7,
pp. 222-228,
(1997)
1996
Optimum superimposition of protein structures: ambiguities and implications.
Fold.Des.,
1,
pp. 123-132,
(1996)
The lipocalin Xlcpl1 expressed in the neural plate of Xenopus laevis embryos is a secreted retinaldehyde binding protein.
Protein Sci.,
5,
pp. 1250-1260,
(1996)
Helmholtz free energy of peptide hydrogen bonds in proteins.
J.Mol.Biol.,
260,
pp. 644-648,
(1996)
Threading thrills and threats.
Structure.,
4,
pp. 15-19,
(1996)
Helmholtz free energies of atom pair interactions in proteins.
Fold.Des.,
1,
pp. 289-298,
(1996)
Molecular and structural analysis of a continuous birch profilin epitope defined by a monoclonal antibody.
J.Biol.Chem.,
271,
pp. 29915-29921,
(1996)
1995
Screening genome sequences for known folds.
In:Protein folds:A distance based approach, Bohr,H.&Brunak,S.(eds).,
0:,
pp. 80-84,
(1995)
Progress in fold recognition.
Proteins.,
23,
pp. 376-386,
(1995)
Knowledge-based potentials for proteins.
Curr.Opin.Struct.Biol.,
5,
pp. 229-235,
(1995)
Fold recognition.
Modelling of Biomolecular Structures & Mechanisms;Pullman,A ea(eds).,
0:,
pp. 107-118,
(1995)
1994
Predictive power of mean force potentials.
Protein Structure by Distance Analysis;Bohr,H.&Brunak,S(eds).,
0:,
pp. 113-134,
(1994)
Applications of knowledge based mean fields in the determination of protein structures.
Stat.mechanics, protein struct & protein.substrate interactions;Doniach(ed).,
0:,
pp. 297-315,
(1994)
In search of protein folds.
The protein folding problem & tertiary structure prediction;Merz,LeGrand(eds).,
0:,
pp. 353-407,
(1994)
1993
Recognition of errors in three-dimensional structures of proteins.
Proteins.,
17,
pp. 355-362,
(1993)
Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures.
J.Comput.Aided Mol.Des.,
7,
pp. 473-501,
(1993)
1992
Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds.
J.Mol.Biol.,
224,
pp. 725-732,
(1992)
Assembly of polypeptide and protein backbone conformations from low energy ensembles of short fragments: development of strategies and construction of models for myoglobin, lysozyme, and thymosin beta 4.
Protein Sci.,
1,
pp. 625-640,
(1992)
Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations.
Proteins.,
13,
pp. 258-271,
(1992)
1991
Molecular basis of lipoprotein lipase deficiency in two Austrian families with type I hyperlipoproteinemia.
Atherosclerosis.,
86,
pp. 239-250,
(1991)
Superposition of three-dimensional objects: A fast and numerically stable algorithm for the calculation of the matrix of optimal rotation.
Computers Chem.,
15,
pp. 73-78,
(1991)
1990
Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force.
J.Mol.Biol.,
216,
pp. 167-180,
(1990)
Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.
J.Mol.Biol.,
213,
pp. 859-883,
(1990)
1989
Analysis of the cDNA for phospholipase A2 from honeybee venom glands. The deduced amino acid sequence reveals homology to the corresponding vertebrate enzymes.
Eur.J.Biochem.,
184,
pp. 249-254,
(1989)
1986
Cayley-Menger coordinates.
Proc.Natl.Acad.Sci.USA.,
83,
pp. 2283-2287,
(1986)
1985
Solution of the embedding problem and decomposition of symmetric matrices.
Proc.Natl.Acad.Sci.USA.,
82,
pp. 2197-2201,
(1985)
1984
Intermolecular potentials from crystal data. 6. Determination of empirical potentials for O-H...O=C hydrogen bonds from packing configurations.
J.Phys.Chem.,
88:,
pp. 6231-6233,
(1984)
1982
On the problem of comparing protein structures. Development and applications of a new method for the assessment of structural similarities of polypeptide conformations.
J.Mol.Biol.,
156,
pp. 359-388,
(1982)
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